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Yeqi Li

Postdoctoral Research Associate

Yeqi joined the Lin lab in 2021 as a postdoctoral associate. He received a Ph.D degree from the Nanjing Normal University. His previous work mainly focuses on the drug resistance in Aspergillus fumigatus. Now his project involves in how the cryptococcus promotes host protective immune response. He is exploring which antigens presented in the cryptococcal cells and how to use these antigens or filamentous strains as vaccine candidates. With these works, he hopes to unravel the molecular mechanisms of antigens providing the protective effect. 

Labs (via personnel):
Labs:
Selected Publications:

1. Li Y, Ambati S, Meagher BR, and Lin X. Developing mRNA lipid nanoparticle vaccine for cryptococcosis. NPJ Vaccines. 2025 Feb 04; 10(1):24. 

2. Li Y, Pham T, Hipsher K, Lee C, Jiao J, Penninger MJ, Kronstad WJ, Fan Y, Zhao Y, Ambati S, Meagher BR, Xie X, and Lin X. Identification of a protective antigen reveals the trade-off between iron acquisition and antigen exposure in a global fungal pathogen. Proc Natl Acad Sci U S A2025 Feb 13; 122 (7) e2420898122.

3. Li Y, Chadwick B, Pham T, Xie X, Lin X. Aspartyl peptidase May1 induces host inflammatory response by altering cell wall composition in the fungal pathogen Cryptococcus neoformans. mBio 2024 May 14:e0092024.

4. Pham T#, Li Y#, Watford W, Lin X. Vaccination with a ZNF2oe strain provides long-lasting protection against cryptococcosis and is effective in immunocompromised hosts. Infect Immun 2023 Jul 18;91(7):e0019823..

5. Li Y, Pham T, Xie X, Lin X. Identification and characterization of an intergenic “safe haven” region in human fungal pathogen Cryptococcus gattiiJ. Fungi 2022, 8, 178.

 

 

 

Characterization of Type 6 Secretion System (T6SS) genes in Extra-intestinal Pathogenic Escherichia coli (ExPEC)

Aline de Oliveira

Characterization of Type 6 Secretion System (T6SS) genes in Extra-intestinal Pathogenic Escherichia coli (ExPEC)

Online via Zoom
Special Information:
Email mibcoord@uga.edu for more information.
Type of Event:
Student Seminars
Aline de Oliveira
Logue Laboratory
UGA Dept of Microbiology

New MGSA Officers Elected for 2021-2022

The Microbiology Department would like to congratulate the MGSA officers for 2021-2022. The newly elected officers will begin their term in July 2021.  We are very excited to have this great group leading us through the next academic year.  Please congratulate your new MGSA!

President: Neely Wood

Treasurer: Regan McCormick

Recruitment Chairs: Amber Matha, Jared Smith

Social Chair: Ashley Rogers

Peer Mentoring Chairs: Rachel Dockman, Suki Putumbaka

Communication & Outreach: Alyssa Baugh

Andrew Wiggins Receives 2020-2021 Excellence in Teaching Award

The Microbiology Department is excited to announce that Andrew Wiggins, Summers Lab, is a recipient of the 2020-2021 ETA Award! The Center for Teaching and Learning administers the Excellence in Teaching Award (ETA), sponsored by the Graduate School. This highly competitive award recognizes teaching assistants who contribute to teaching at UGA beyond their own assigned classroom responsibilities. The ETA is the top teaching award for graduate students at UGA. Congratulations Andrew!

CRISPR-Cas systems and their Interaction with Bacteriophage

Dr. Andrew Varble
Online via Zoom
Special Information:
Please contact Nancy Perkins at nancydh@uga.edu for Zoom link and passcode
Type of Event:
Department Seminars
Dr. Andrew Varble
Marraffini Laboratory
The Rockefeller University

Abstract:

CRISPR loci are composed of short DNA repeats separated by sequences that match the genomes of phages and plasmids, known as spacers. Spacers are transcribed and processed to generate RNA guides used by CRISPR-associated nucleases to recognize and destroy the complementary nucleic acids of invaders. My postdoctoral work focused on 2 elements of this immune response: (1) Although, CRISPR-cas loci are widely distributed throughout microbial genomes and often display hallmarks of horizontal gene transfer, the drivers of CRISPR dissemination remain unclear. I show that spacers can recombine with phage target sequences to mediate a form of specialized transduction of CRISPR elements. (2) To counteract CRISPR defense, phages can produce small proteins that inhibit these nucleases. I demonstrate that the ΦAP1.1 temperate phage first expresses a canonical anti-CRISPR, to prevent Cas9 function, and then integrates into the direct repeats of the CRISPR locus to neutralize immunity during lysogeny. Building on these findings, I plan to characterize the interaction between CRISPR immunity and horizontal gene transfer, while also expanding this dynamic to determine wide-ranging mechanisms and barriers to horizontal gene transfer and how this impacts the pathogenicity of Staphylococcus and Streptococcus organisms.

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