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Slideshow

Phylogenomics and the metabolism of sulfur compounds in the roseobacter group

Joe Wirth
Joe S. Wirth
Whitman Lab
UGA Department of Microbiology
Room 404D, Biological Sciences
Type of Event:
Student Seminars

The roseobacter group comprise up to 25 % of the total bacterial community in the surface waters of the ocean, and its members possess a great deal of physiological and genetic diversity. Taxonomic assignments within the roseobacter group have been primarily based on 16S rRNA gene sequences. However, recent studies have demonstrated that this gene lacks the resolution for accurately assigning organisms within the roseobacter group. To address this problem, whole-genome sequence data was used to construct a taxonomy that accurately depicts evolutionary relationships. The result of these analyses was the taxonomic reassignment of 34 species and the proposal of six novel genera.

Dimethylsulfoniopropionate (DMSP) is abundant in marine surface waters and can reach micromolar concentrations, and Ruegeria pomeroyi, a member of the roseobacter group, is capable of metabolizing it. Previous studies have shown that the methyl carbon and sulfur of DMSP are incorporated into methionine, and this led to the hypothesis that the direct capture of methanethiol was the major pathway for methionine biosynthesis from DMSP. To test this hypothesis, a highly efficient method for synthesizing di(methyl-13C)sulfonio-34S-propionate ([13C][34S]DMSP) was developed. The [13C][34S]DMSP was subsequently fed to R. pomeroyi in chemostat and the resulting isotopic labeling of methionine was examined. These experiments indicated that only one-third of methionine was synthesized via the direct capture of methanethiol while the remainder was synthesized by the random reassembly of the sulfur and methyl atoms. The findings also indicated that DMSP was the major source of sulfur even when present at concentrations <1 μM.

Abstract or other information:

Amber Matha

Graduate Student

Amber joined the Lin lab as a graduate student in 2018.  She is interested in investigating and deciphering the utilization of Ni as a micronutrient as well as the process of sexual reproduction in Cryptococcus neoformans. Ni has almost exclusively been studied as a toxin in the environment and the mechanisms that fungi use to regulate Ni homeostasis are unknown.

Education:

B.S. in Biochemistry, Mercyhurst University (2018)

Labs (via personnel):
Labs:
Selected Publications:

Matha, Amber R., Xiaofeng Xie, and Xiaorong Lin. "Ergosterol Is Critical for Sporogenesis in Cryptococcus neoformans." Journal of Fungi 10.2 (2024): 106.

Matha, Amber R., and Xiaorong Lin. "Current perspectives on uniparental mitochondrial inheritance in Cryptococcus neoformans." Pathogens 9.9 (2020): 743.

 

Tremper, C., Matha, A. R., & Taylor, C. E. (2017). Assessing the Effects of ErbB2 Kinase Inhibition in Conjunction with Broad Spectrum Anti-Cancer Treatments. In FASEB JOURNAL Vol. 31 (pp. 1 page). Chicago, IL: FEDERATION AMER SOC EXP BIOL. Retrieved from http://gateway.webofknowledge.com/

Of note:

Molecular Mycology Course TA- July-Aug 2021

Mycology Graduate Student Organization- President May 2019-May 2020

Microbiology Graduate Student Organization- Recruitment Co-Chair May 2020-present

Microbiology Graduate Student Organization- President Dec 2021-present

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